Software
Variant annotation and ranking for whole genome sequence data
PCA informative markers and PCA-based genotype imputation
- Paschou et al. Genome Research 2007. Inter- and intrapopulation
genotype reconstruction from tagging SNPs.(MATLAB code)
- Paschou et al. PLoS Genetics 2007. PCA-correlated SNPs for
structure identification in worldwide human populations.
(supplementary
results and MATLAB code)
- Paschou et al. PLoS Genetics 2008. Tracing sub-structure in
the European American population with PCA-informative markers.
(supplementary
results and MATLAB code)
- Drineas et al. PLoS ONE 2010. Inferring Geographic
Coordinates of Origin for Europeans using Small Panels of Ancestry
Informative
Markers. (supplementary results and MATLAB code)
- Paschou et al. Journal of Medical Genetics 2010. Ancestry informative markers for fine-scale
individual assignment to
worldwide populations. (supplementary
results and MATLAB code)
- Lewis et al. PLoS ONE 2011. Tracing Cattle Breeds With PCA-based Ancestry
Informative SNPs. (supplementary results and MATLAB code)
- Javed et al. submitted. Efficient genomewide
selection of PCA-correlated tSNPs for genotype imputation. (TRIMMER
will be released shortly).