Nicholas M. Glykos' group

Active members

Other than NMG, the group presently comprises Zachariadis Anastasios (ncarma : a curses-based text user interface to the program carma, BSc), Latsiou Antigone (Application of UMAP dimensionality reduction to folding molecular dynamics simulations, BSc), Panagopoulos Euaggelos-Marios (Modeling the interaction between a non-specific DNA-binding peptide and canonical B-DNA, MSc), Tafanidis Alexandros (Using AlphaFold2 to predict structures of non-naturally occurring proteins: the ROP case, MSc), Touliopoulos Sotirios (Atomic density distributions in proteins : structural and functional implications, BSc), Zigkou Aristea-Marina (Folding of the human Pin1 WW domain using molecular dynamics simulations, BSc), Mitraina Georgia (Structural computational biology studies of an antimicrobial peptide with a WWW motif, MSc).

PhD theses

  • Apostolou-Karampelis, K. (2016) "Study of compositional patterns, distributions and symmetries of nucleotide motifs at genome scale", PhD thesis (PDF 8.3 MBytes).
  • Georgoulia P. (2012) "Computational studies of foldable tetra- and penta-peptides", PhD thesis (PDF 10 MBytes).

MSc theses

Final year theses

Recent conference posters

  • Chatzopoulou, M. & Glykos, N.M. (2021) "Geometric modeling of coiled-coils using Isambard: the case of the RM6 variant of the Repressor of Primer protein", HSCBB21 conference (Abstract, Poster).
  • Giannaki, A.-A. & Glykos, N.M. (2021) "Buried β-turns in hydrophobic cores: Structural and Functional Implications", HeCrA conference (PDF 0.8 MBytes).
  • Mitsikas, D. & Glykos, N.M. (2018) "Propensities of Asn-Gly heptapeptides to form β-turn structures: a Molecular Dynamics simulation approach", HeCrA-HSCBB conference (PDF 1.9 MBytes).
  • Moschou, D. & Glykos, N.M. (2016) "Approaching the crystallographic phase problem with Artificial Neural Networks", HeCrA-HSCBB conference (PDF 0.5 MBytes).
  • Riziotis, I. & Glykos, N.M. (2016) "Two-residue periodicities in protein structures : Results from a systematic search in 4-dimensional Ramachandran space", HeCrA-HSCBB conference, HSBMB conference (PDF 2.0 MBytes).
  • Baltzis, A. & Glykos, N.M. (2014) "Multidimensional PCA-based clustering of molecular dynamics trajectories", HeCrA conference (PDF 0.2 MBytes).
  • Serafeim A.-P. & Glykos, N.M. (2014) "Molecular Dynamics Simulations of a Ten-Amino Acid Protein", HeCrA conference (PDF 0.8 MBytes).
  • Patmanidis, I. & Glykos, N.M. (2012) "Folding simulations of a highly frustrated peptide", HSCBB conference (PDF 1.2 MBytes).