The facebook shown below includes both active members, and members that have moved along with their lives long time ago. The result is that most of the faces you see are -and will remain- frozen in time (which, undoubtedly, is a property of all photographs, but you already knew that).
Active members
Other than NMG, the group presently comprises Dimitrakopoulos Antonios (Folding of cystine-containing peptides in the reduced state), Arvaniti Konstantina-Olympia (Peptide folding in TFE/water mixtures), Psallidas Kyriakos (Foldable subdomain structures), Mitsikas Dimitrios (Folding of Asn-Gly-containing peptides), Chatzistylianou Panagiota (Folding of an amyloid Αβ-derived peptide), Boukoura Theodora (In silico mutagenesis studies of the influenza hemagglutinin/receptor complex), Chatzisavvas Aleksandros (Transition state identification via Q-T diagrams), Athanasopoulos Panagiotis (Crystallographic studies of a DNA methyltransferase), and Valaroutsou Euaggelia (Folding of a vammin-derived mutant peptide).
PhD theses
- Georgoulia P. (2012) "Computational studies of foldable tetra- and penta-peptides", PhD thesis (PDF 10 MBytes).
MSc theses
- Chatzidimitriou D. (2015) "Approaching the phase problem of X-Ray crystallography with feed forward neural networks", MSc thesis (PDF 3.0 MBytes).
Final year theses
- Adamidou T. (2017) "Folding of an FTZ-derived peptide", Diploma thesis (PDF 1.0 MBytes).
- Moschou D. (2017) "Application of Artificial Neural Networks to the crystallographic phase problem", Diploma thesis (PDF 1.7 MBytes).
- Riziotis I. (2017) "Two residue periodicities in protein structures: Results from a systematic search in 4-dimensional Ramachandran space", Diploma thesis (PDF 4.0 MBytes).
- Serafeim A.-P. (2016) "Assessing the accuracy of the AMBER family of force fields : the CLN025 peptide", Diploma thesis (PDF 2.5 MBytes).
- Baltzis A. (2015) "Accuracy of folding simulations for marginally stable peptides : the HP21 case", Diploma thesis (PDF 2.8 MBytes).
- Koumoundourou E.-A. (2015) "Folding molecular dynamics simulations of a FMRF-amide-like peptide from C. elegans", Diploma thesis (PDF 2.3 MBytes).
- Tafarli T. (2014) "Folding molecular dynamics simulations of ubiquitin's N-terminal peptide", Diploma thesis (PDF 4.6 MBytes).
- Koukos P.I. (2013) "grcarma: A Fully Automated Task-Oriented Interface for the Analysis of Molecular Dynamics Trajectories", Diploma thesis (PDF 2.9 MBytes).
- Patmanidis I. (2013) "Folding simulations of the choline-binding repeat from the protein LytA", Diploma thesis (PDF 3.9 MBytes).
- Kontopoulos D.-G. (2012) "Pinda : a gene duplication detection program", Diploma thesis (PDF 1.7 MBytes).
- Kousa A. (2011) "Sequence-similar, structure dissimilar proteins: Anfinsen revisited.", Diploma thesis (PDF 4.7 MBytes).
- Patapati K. K. (2010) "Molecular dynamics simulations of the αLa(101-111) peptide of α-Lactalbumin", Diploma thesis (PDF 4.6 MBytes).
- Maradidou S. (2010) "Molecular dynamics simulations of the peptide AAGDYY", Diploma thesis (PDF 1.1 MBytes).
- Kokkinidou M. (2010) "Homology modelling and molecular dynamics simulations of a homotetrameric Rop variant", Diploma thesis (PDF 4.1 MBytes).
- Koutsovoulos G. (2008) "HMDock: A computer program for homology modelling and docking", Diploma thesis (PDF 1.5 MBytes).
- Pougounia A. (2007) "Computational studies of the native Rop protein", Diploma thesis (PDF 3 MBytes).
- Palitskaris D. (2007) "Peptide-nucleic acids interactions: molecular dynamics simulations of the EcoRI's recognition peptide and its cognate sequence", Diploma thesis.
- Papaioannou H. (2007) "Molecular dynamics studies of a Rop variant with a re-designed hydrophobic core: Ala(2) Ile(2) -6", Diploma thesis (PDF 8.0 MBytes).
- Georgoulia P. (2006) "Molecular dynamics simulations of an artificial 4-α-helical bundle: Ala(2) Leu(2) -8", Diploma thesis (PDF 5.5 MBytes).
Recent conference posters
- Moschou, D. & Glykos, N.M. (2016) "Approaching the crystallographic phase problem with Artificial Neural Networks", HeCrA-HSCBB conference (PDF 0.5 MBytes).
- Riziotis, I. & Glykos, N.M. (2016) "Two-residue periodicities in protein structures : Results from a systematic search in 4-dimensional Ramachandran space", HeCrA-HSCBB conference, HSBMB conference (PDF 2.0 MBytes).
- Baltzis, A. & Glykos, N.M. (2014) "Multidimensional PCA-based clustering of molecular dynamics trajectories", HeCrA conference (PDF 0.2 MBytes).
- Serafeim A.-P. & Glykos, N.M. (2014) "Molecular Dynamics Simulations of a Ten-Amino Acid Protein", HeCrA conference (PDF 0.8 MBytes).
- Patmanidis, I. & Glykos, N.M. (2012) "Folding simulations of a highly frustrated peptide", HSCBB conference (PDF 1.2 MBytes).