Publications


27-ABSTRACT. Fadouloglou, V.E., Stavrakoudis, S., Bouriotis, V., Kokkinidis, M., &  Glykos*, N.M. (2009), "Molecular Dynamics Simulations of BcZBP, A Deacetylase from Bacillus cereus: Active Site Loops Determine Substrate Accessibility and Specificity", J. Chem. Theory Comput., 5, 3299-3311.
Electronic reprint (7.3 MBytes) : Directly from J. Chem. Theory Comput., 5, 3299-3311, Copyright © American Chemical Society.


26-ABSTRACT. Fadouloglou, V.E., Bastaki, M.N., Ashcroft, A.E., Phillips, S.E.V., Panopoulos, N.J., Glykos*, N.M., & Kokkinidis*, M. (2009), "On the quaternary association of the type III secretion system HrcQB-C protein: Experimental evidence differentiates among the various oligomerization models", J. Struct. Biol., 166, 214-225.
Electronic reprint (3.7 MBytes) : Local copy, or directly from J. Struct. Biol., 166, 214-225, Copyright © Elsevier B.V.


25-ABSTRACT. Fadouloglou, V.E., Kokkinidis, M. & Glykos*, N.M. (2008), "Determination of protein oligomerization state: Two approaches based on glutaraldehyde crosslinking", Anal. Biochem., 373, 404-406.
Electronic reprint (605 KBytes) : Local copy, or directly from Anal. Biochem., 373, 404-406, Copyright © Elsevier B.V.


24-ABSTRACT. Mizas, Ch., Sirakoulis, G.Ch., Mardiris, V., Karafyllidis, I., Glykos, N.M. & Sandaltzopoulos*, R. (2008), "Reconstruction of DNA sequences using genetic algorithms and cellular automata: Towards mutation prediction ?", BioSystems, 92, 61-68.
Electronic reprint (574 KBytes) : Local copy, or directly from BioSystems, 92, 61-68, Copyright © Elsevier B.V.


23-ABSTRACT. Fadouloglou, V.E., Deli, A., Glykos, N.M., Psylinakis, E., Bouriotis, V. & Kokkinidis*, M. (2007), "Crystal structure of the BcZBP, a zinc-binding protein from Bacillus cereus. Functional insights from structural data", FEBS J., 274, 3044-3054.
Electronic reprint (1.2 MBytes) : Local copy, or directly from FEBS J., 274, 3044-3054, Copyright © Blackwell Publishing, Inc.


22-ABSTRACT. Glykos*, N.M. (2007), "On the application of molecular-dynamics simulations to validate thermal parameters and to optimize TLS-group selection for macromolecular refinement", Acta Crystallogr., D63, 705-713.
Electronic reprint (1.4 MBytes) : Local copy, or directly from Acta Cryst. D63, 705-713, Copyright © International Union of Crystallography.


21-ABSTRACT. Glykos*, N.M. (2006), "Carma: a molecular dynamics analysis program", J. Comput. Chem., 27, 1765-1768.
Electronic reprint (284 KBytes) : Local copy, or directly from Wiley InterScience, Copyright © Wiley InterScience.


20-ABSTRACT. Glykos, N.M., Papanikolau, Y., Vlassi, M., Kotsifaki, D., Cesareni G. & Kokkinidis*, M. (2006), "Loopless Rop: Structure and Dynamics of an Engineered Homotetrameric Variant of the Repressor of Primer Protein", Biochemistry, 45, 10905-10919.
Electronic reprint (2.0 MBytes) : Local copy, or directly from the American Chemical Society, Copyright © American Chemical Society.


19-ABSTRACT. Glykos*, N.M. (2005), "Qs v.1.3: a parallel version of Queen of Spades", J. Appl. Crystallogr., 38, 574-575.
Electronic reprint (65 KBytes) : Local copy, or directly from J. Appl. Crystallogr. 38, 574-575, Copyright © International Union of Crystallography.


18-ABSTRACT. Glykos, N.M. & Kokkinidis*, M. (2004), "Structural Polymorphism of a Marginally Stable 4-alpha-Helical Bundle. Images of a Trapped Molten Globule ?", Proteins, 56, 420-425.
Electronic reprint (312 KBytes) : Local copy, or directly from Wiley InterScience, Copyright © Wiley InterScience.


17-ABSTRACT. Papanikolau, Y., Kotsifaki, D., Fadouloglou, V.E., Gazi, A.D., Glykos, N.M., Cesareni G. & Kokkinidis*, M. (2004), "Ionic strength reducers: an efficient approach to protein purification and crystallization. Application to two Rop variants.", Acta Crystallogr., D60, 1334-1337.
Electronic reprint (539 KBytes) : Local copy, or directly from Acta Cryst. D60, 1334-1337, Copyright © International Union of Crystallography.


16-ABSTRACT. Glykos*, N.M. & Kokkinidis, M. (2004), "Molecular Replacement with multiple different models", J. Appl. Crystallogr., 37, 159-161.
Electronic reprint (1.1 MBytes) : Local copy, or directly from J. Appl. Crystallogr. 37, 159-161, Copyright © International Union of Crystallography.


15-ABSTRACT. Fadouloglou, V.E., Tampakaki, A.P., Glykos, N.M., Bastaki, N., Hadden, J.M., Phillips, S.E., Panopoulos, N.J. & Kokkinidis*, M. (2004), "Structure of HrcQb-C, a conserved component of the bacterial type III secretion systems", Proc. Natl. Acad. Sci. USA, 101, 70-75.
Electronic reprint (629 KBytes) : Local copy, or directly from Proc. Natl. Acad. Sci. USA, 101, 70-75, Copyright © National Academy of Sciences USA.


14-ABSTRACT. Glykos*, N.M. & Kokkinidis, M. (2003), "Structure determination of a small protein through a 23-dimensional molecular replacement search", Acta Crystallogr., D59, 709-718.
Electronic reprint (3.8 MBytes) : Local copy, or directly from Acta Cryst. D59, 709-718, Copyright © International Union of Crystallography.


13-ABSTRACT. Dennis, C.A., Glykos, N.M., Parsons, M.R. & Phillips*, S.E.V. (2002), "The structure of AhrC, the arginine repressor/activator protein from Bacillus subtilis", Acta Crystallogr., D58, 421-430.
Electronic reprint (1.6 MBytes) : Local copy, or directly from Acta Cryst. D58, 421-430, Copyright © International Union of Crystallography.


12-ABSTRACT. Glykos*, N.M. & Kokkinidis, M. (2001), "Multidimensional Molecular Replacement", Acta Crystallogr., D57, 1462-1473.
Electronic reprint (1.9 MBytes) : Local copy, or directly from Acta Cryst. D57, 1462-1473, Copyright © International Union of Crystallography.
The ECM 20 (Krakow, 2001) presentation is also available for download (Powerpoint presentation, 1.6 MB).


11-ABSTRACT. Fadouloglou, V.E., Glykos, N.M. & Kokkinidis*, M. (2001), "Side-chain conformations in 4-alpha-helical bundles", Protein Engng., 14, 321-328.
Electronic reprint (385 KBytes) : Local copy, or directly from Protein Engng. 14, 321-328, Copyright © Oxford University Press.


10-ABSTRACT. Fadouloglou, V.E., Glykos*, N.M. & Kokkinidis, M. (2000), "A fast and inexpensive procedure for drying polyacrylamide gels.", Anal. Biochem., 287, 185-186.
Electronic reprint (69 KBytes) : Local copy, or directly from Anal. Biochem. 287, 185-186, Copyright © Elsevier B.V.


9-ABSTRACT. Spyridaki, A., Glykos, N.M., Kotsifaki, D., Fadouloglou, V. & Kokkinidis*, M. (2000), "Crystallization and diffraction to ultrahigh resolution (0.8A) of a designed variant of the Rop protein.", Acta Crystallogr., D56, 1015-1016.
Electronic reprint (237 KBytes) : Local copy, or directly from Acta Cryst. D56, 1015-1016, Copyright © International Union of Crystallography.


8-ABSTRACT. Glykos, N.M. & Kokkinidis*, M. (2000), "On the distribution of the bulk solvent correction parameters", Acta Crystallogr., D56, 1070-1072.
Electronic reprint (384 KBytes) : Local copy, or directly from Acta Cryst. D56, 1070-1072, Copyright © International Union of Crystallography.


7-ABSTRACT. Glykos*, N.M. & Kokkinidis, M. (2000), "GraphEnt : a maximum entropy program with graphics capabilities.", J. Appl. Crystallogr., 33, 982-985.
Electronic reprint (777 KBytes) : Local copy, or directly from J. Appl. Cryst. 33, 982-985, Copyright © International Union of Crystallography.


6-ABSTRACT. Andreeva, A.E., Borissova, B.E., Mironova, R., Glykos, N.M., Kotsifaki, D., Ivanov, I., Krysteva, M. & Kokkinidis*, M. (2000), "Crystallization of type I chloramphenicol acetyltransferase : An approach based on the concept of ionic strength reducers", Acta Crystallogr., D56, 101-103.
Electronic reprint (319 KBytes) : Local copy, or directly from Acta Cryst. D56, 101-103, Copyright © International Union of Crystallography.


5-ABSTRACT. Glykos*, N.M. & Kokkinidis, M. (2000), "A stochastic approach to Molecular Replacement", Acta Crystallogr., D56, 169-174.
Electronic reprint (415 KBytes) : Local copy, or directly from Acta Cryst. D56, 169-174, Copyright © International Union of Crystallography.
The CCP4 2001 Study Weekend presentation is also available for download (Powerpoint presentation, 1 MB).
The ECM 20 (Krakow, 2001) presentation is also available for download (Powerpoint presentation, 1.6 MB).


4-ABSTRACT. Glykos*, N.M. (1999), "Pepinsky's Machine : an interactive, graphics-based Fourier synthesis program with applications in teaching and research.", J. Appl. Crystallogr., 32, 821-823.
Electronic reprint (660 KBytes) : Local copy, or directly from J. Appl. Cryst. 32, 821-823, FREE ITEM, Copyright © International Union of Crystallography.


3-ABSTRACT. Glykos, N.M. & Kokkinidis*, M. (1999), "Meaningful refinement of poly-alanine models using rigid-body simulated annealing : application to the structure determination of the A31P Rop mutant.", Acta Crystallogr., D55, 1301-1308.
Electronic reprint (1.7 MBytes) : Local copy, or directly from Acta Cryst. D55, 1301-1308, Copyright © International Union of Crystallography.


2-ABSTRACT. Glykos, N.M., Cesareni, G. & Kokkinidis*, M. (1999), "Protein plasticity to the extreme : Changing the topology of a 4-alpha-helical bundle with a single amino-acid substitution.", Structure 7, 597-603.
Electronic reprint (2.2 MBytes) : Local copy, or directly from ScienceDirect, Copyright © Current Biology Publications.


1-ABSTRACT. Glykos, N.M., Holzenburg, A.K.H. & Phillips*, S.E.V. (1998), "Low resolution structural characterisation of the Arginine repressor/activator from Bacillus subtilis : A combined X-ray crystallographic and electron microscopical approach", Acta Crystallogr., D54, 215-225, and Acta Crystallogr., D54, 707-707.
Electronic reprint (2.6 MBytes) : Local copy, or directly from Acta Cryst. D54, 215-225, Copyright © International Union of Crystallography.


0-ABSTRACT. Glykos, N.M. (1995), "Structural studies of the arginine repressor/activator from Bacillus subtilis", PhD thesis, Thesis advisor Prof Simon E.V. Phillips, Astbury Department of Biophysics, University of Leeds.
Electronic reprint (7.7 MBytes)