Publications
27-ABSTRACT.
Fadouloglou, V.E., Stavrakoudis, S., Bouriotis, V., Kokkinidis, M., & Glykos*, N.M. (2009),
"Molecular Dynamics Simulations of BcZBP, A Deacetylase from Bacillus
cereus: Active Site Loops Determine Substrate Accessibility and
Specificity",
J. Chem. Theory Comput., 5, 3299-3311.
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J. Chem. Theory Comput., 5, 3299-3311, Copyright © American Chemical Society.
26-ABSTRACT.
Fadouloglou, V.E., Bastaki, M.N., Ashcroft, A.E., Phillips, S.E.V.,
Panopoulos, N.J., Glykos*, N.M., & Kokkinidis*, M. (2009),
"On the quaternary association of the type III secretion system HrcQB-C
protein: Experimental evidence differentiates among the various
oligomerization models",
J. Struct. Biol., 166, 214-225.
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J. Struct. Biol., 166, 214-225, Copyright © Elsevier B.V.
25-ABSTRACT.
Fadouloglou, V.E., Kokkinidis, M. & Glykos*, N.M. (2008),
"Determination of protein oligomerization state: Two approaches based on
glutaraldehyde crosslinking",
Anal. Biochem., 373, 404-406.
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Anal. Biochem., 373, 404-406, Copyright © Elsevier B.V.
24-ABSTRACT.
Mizas, Ch., Sirakoulis, G.Ch., Mardiris, V., Karafyllidis, I., Glykos, N.M.
& Sandaltzopoulos*, R. (2008), "Reconstruction of DNA sequences
using genetic algorithms and cellular automata: Towards mutation prediction ?",
BioSystems, 92, 61-68.
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BioSystems, 92, 61-68, Copyright © Elsevier B.V.
23-ABSTRACT.
Fadouloglou, V.E., Deli, A., Glykos, N.M.,
Psylinakis, E., Bouriotis, V. & Kokkinidis*, M. (2007),
"Crystal structure of the BcZBP, a zinc-binding protein from Bacillus
cereus. Functional insights from structural data",
FEBS J., 274, 3044-3054.
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FEBS J., 274, 3044-3054, Copyright © Blackwell Publishing, Inc.
22-ABSTRACT.
Glykos*, N.M. (2007),
"On the application of molecular-dynamics simulations to validate thermal
parameters and to optimize TLS-group selection for macromolecular refinement",
Acta Crystallogr., D63, 705-713.
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Acta Cryst. D63, 705-713, Copyright © International Union of Crystallography.
21-ABSTRACT.
Glykos*, N.M. (2006),
"Carma: a molecular dynamics analysis program",
J. Comput. Chem., 27, 1765-1768.
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Wiley InterScience, Copyright © Wiley InterScience.
20-ABSTRACT.
Glykos, N.M., Papanikolau, Y., Vlassi, M., Kotsifaki, D.,
Cesareni G. & Kokkinidis*, M. (2006),
"Loopless Rop: Structure and Dynamics of an Engineered Homotetrameric
Variant of the Repressor of Primer Protein",
Biochemistry, 45, 10905-10919.
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the
American Chemical Society, Copyright © American Chemical Society.
19-ABSTRACT.
Glykos*, N.M. (2005),
"Qs v.1.3: a parallel version of Queen of Spades",
J. Appl. Crystallogr., 38, 574-575.
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J. Appl. Crystallogr. 38, 574-575, Copyright © International Union of Crystallography.
18-ABSTRACT.
Glykos, N.M. & Kokkinidis*, M. (2004),
"Structural Polymorphism of a Marginally Stable 4-alpha-Helical
Bundle. Images of a Trapped Molten Globule ?",
Proteins, 56, 420-425.
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Wiley InterScience, Copyright © Wiley InterScience.
17-ABSTRACT.
Papanikolau, Y., Kotsifaki, D., Fadouloglou, V.E., Gazi, A.D.,
Glykos, N.M., Cesareni G. & Kokkinidis*, M. (2004),
"Ionic strength reducers: an efficient approach to protein purification and
crystallization. Application to two Rop variants.",
Acta Crystallogr., D60, 1334-1337.
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Acta Cryst. D60, 1334-1337, Copyright © International Union of Crystallography.
16-ABSTRACT.
Glykos*, N.M. & Kokkinidis, M. (2004),
"Molecular Replacement with multiple different models",
J. Appl. Crystallogr., 37, 159-161.
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J. Appl. Crystallogr. 37, 159-161, Copyright © International Union of Crystallography.
15-ABSTRACT.
Fadouloglou, V.E., Tampakaki, A.P.,
Glykos, N.M., Bastaki, N., Hadden, J.M., Phillips, S.E., Panopoulos, N.J.
& Kokkinidis*, M. (2004),
"Structure of HrcQb-C, a conserved component of the bacterial type III secretion systems",
Proc. Natl. Acad. Sci. USA, 101, 70-75.
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Proc. Natl. Acad. Sci. USA, 101, 70-75, Copyright © National Academy of Sciences USA.
14-ABSTRACT.
Glykos*, N.M. & Kokkinidis, M. (2003),
"Structure determination of a small protein through a 23-dimensional
molecular replacement search",
Acta Crystallogr., D59, 709-718.
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Acta Cryst. D59, 709-718, Copyright © International Union of Crystallography.
13-ABSTRACT.
Dennis, C.A., Glykos, N.M., Parsons, M.R. & Phillips*, S.E.V. (2002),
"The structure of AhrC, the arginine repressor/activator protein from Bacillus subtilis",
Acta Crystallogr., D58, 421-430.
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Acta Cryst. D58, 421-430, Copyright © International Union of Crystallography.
12-ABSTRACT.
Glykos*, N.M. & Kokkinidis, M. (2001),
"Multidimensional Molecular Replacement", Acta Crystallogr., D57, 1462-1473.
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Acta Cryst. D57, 1462-1473, Copyright © International Union of Crystallography.
The ECM 20 (Krakow, 2001) presentation is also available for download
(Powerpoint presentation, 1.6 MB).
11-ABSTRACT.
Fadouloglou, V.E., Glykos, N.M. & Kokkinidis*, M. (2001),
"Side-chain conformations in 4-alpha-helical bundles", Protein Engng., 14, 321-328.
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Protein Engng. 14, 321-328, Copyright © Oxford University Press.
10-ABSTRACT.
Fadouloglou, V.E., Glykos*, N.M. & Kokkinidis, M. (2000),
"A fast and inexpensive procedure for drying polyacrylamide gels.",
Anal. Biochem., 287, 185-186.
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Anal. Biochem. 287, 185-186, Copyright © Elsevier B.V.
9-ABSTRACT.
Spyridaki, A., Glykos, N.M., Kotsifaki, D., Fadouloglou, V.
& Kokkinidis*, M. (2000),
"Crystallization and diffraction to ultrahigh resolution (0.8A) of
a designed variant of the Rop protein.",
Acta Crystallogr., D56, 1015-1016.
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Acta Cryst. D56, 1015-1016, Copyright © International Union of Crystallography.
8-ABSTRACT. Glykos, N.M. & Kokkinidis*, M. (2000),
"On the distribution of the bulk solvent correction parameters",
Acta Crystallogr., D56, 1070-1072.
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Acta Cryst. D56, 1070-1072, Copyright © International Union of Crystallography.
7-ABSTRACT. Glykos*, N.M. & Kokkinidis, M.
(2000), "GraphEnt : a maximum entropy program
with graphics capabilities.", J. Appl. Crystallogr., 33, 982-985.
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J. Appl. Cryst. 33, 982-985, Copyright © International Union of Crystallography.
6-ABSTRACT.
Andreeva, A.E., Borissova, B.E., Mironova, R.,
Glykos, N.M., Kotsifaki, D., Ivanov, I., Krysteva, M.
& Kokkinidis*, M. (2000),
"Crystallization of type I chloramphenicol acetyltransferase :
An approach based on the concept of ionic strength reducers", Acta Crystallogr.,
D56, 101-103.
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Acta Cryst. D56, 101-103, Copyright © International Union of Crystallography.
5-ABSTRACT. Glykos*, N.M. & Kokkinidis, M. (2000), "A
stochastic approach to Molecular Replacement", Acta Crystallogr.,
D56, 169-174.
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Acta Cryst. D56, 169-174, Copyright © International Union of Crystallography.
The CCP4 2001 Study Weekend presentation is also available for download
(Powerpoint presentation, 1 MB).
The ECM 20 (Krakow, 2001) presentation is also available for download
(Powerpoint presentation, 1.6 MB).
4-ABSTRACT. Glykos*, N.M. (1999), "Pepinsky's Machine : an interactive,
graphics-based Fourier synthesis program with applications in teaching
and research.", J. Appl. Crystallogr.,
32, 821-823.
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J. Appl. Cryst. 32, 821-823, FREE ITEM, Copyright © International Union of Crystallography.
3-ABSTRACT. Glykos, N.M. & Kokkinidis*, M. (1999), "Meaningful
refinement of poly-alanine models using rigid-body simulated annealing
: application to the structure determination of the A31P Rop mutant.",
Acta Crystallogr., D55, 1301-1308.
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Acta Cryst. D55, 1301-1308, Copyright © International Union of Crystallography.
2-ABSTRACT. Glykos, N.M., Cesareni, G. & Kokkinidis*, M. (1999),
"Protein plasticity to the extreme : Changing the topology of a 4-alpha-helical
bundle with a single amino-acid substitution.", Structure 7, 597-603.
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ScienceDirect, Copyright © Current Biology Publications.
1-ABSTRACT. Glykos, N.M., Holzenburg, A.K.H. & Phillips*, S.E.V.
(1998), "Low resolution structural characterisation of the Arginine repressor/activator
from Bacillus subtilis : A combined X-ray crystallographic and electron
microscopical approach", Acta Crystallogr., D54, 215-225,
and Acta Crystallogr., D54, 707-707.
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Acta Cryst. D54, 215-225, Copyright © International Union of Crystallography.
0-ABSTRACT. Glykos, N.M.
(1995), "Structural studies of the arginine repressor/activator
from Bacillus subtilis", PhD thesis, Thesis advisor Prof Simon E.V. Phillips, Astbury Department of
Biophysics, University of Leeds.
Electronic reprint (7.7 MBytes)